WinFF 1.3.2 with a much newer FFmpeg is now available. Thanks to Kyle Schwarz for the new ffmpeg build. Unfortunately, because of patents, libfaac is no longer in it. That means all the mp4 presets are gone. Although Google's WebM is now included. You can encode to webm for Youtube and Android (2.3.3 or higher). It makes WinFF one of the easiest WebM encoders out there.
Download WinFF 1.3.2 with ffmpeg-git-4952aff